FastQCFastQC Report
Sun 21 May 2023
EGAF00007940843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544138
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39430.7246323542924773No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32040.5888212181468672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19490.3581811966817241No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15940.29294039379716175No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13560.24920148932807487No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11430.21005700759733742No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10430.19167931664393958No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10250.18837133227232797No Hit
GGTTATTACTTCGATCGCGACGATGTAGCAC9170.1685234260426583No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8550.15712925765155164No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8000.14702152762718282No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7980.14665397380811485No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7410.13617868996467808No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7000.12864383667378496No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6940.1275411752165811No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6220.11430923773013463No Hit
GCATCTTCTTCTAGCGGCAGCTCTTCTCGTG6070.11155258408712496No Hit
AGCCGTCGCCTGGATGACTATTCTCTGGAAC5980.10989859190131915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)