FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502755
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40770.8109317659695079No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG23410.4656343547055723No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14530.2890075682986743No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11690.2325188212946664No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG11500.22873964455848275No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11450.22774512436475022No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9410.18716870046046286No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9130.18159938737556067No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8220.16349911984962856No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8100.16111227138467046No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7870.1565374784935008No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7470.14858131694364055No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7370.1465922765561755No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6720.13366351403765253No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6720.13366351403765253No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6570.13067995345645492No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5830.11596105458921344No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5650.11238078189177632No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5630.11198297381428331No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5630.11198297381428331No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5290.10522023649690207No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5230.10402681226442304No Hit

[OK]Adapter Content

Adapter graph