FastQCFastQC Report
Sun 21 May 2023
EGAF00007940846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509356
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26830.5267435742388428No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20390.40030941031420064No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18790.36889719567453805No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17960.3526021093302131No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15460.3035205239557402No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14430.28329891078145736No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13940.27367892004806066No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG12990.255027917605761No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11150.21890387077014897No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10940.21478101759869325No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10390.20398306881630923No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9870.19377409905841889No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9710.1906328775944526No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9520.18690267710599265No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9440.18533206637400954No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9390.18435043466652007No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9380.1841541083250222No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9110.17885329710457912No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7960.1562757678323216No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7520.14763740880641438No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7360.14449618734244812No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7230.14194394490297552No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6470.12702314294913578No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6200.1217223317286927No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG5960.1170104995327433No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5230.10267867660339725No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5120.10051908684692043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)