FastQCFastQC Report
Wed 31 May 2023
EGAF00007940847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509356
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40070.786679650382051No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27230.5345966278987585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26310.5165346044809525No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19570.3842106503113736No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18570.3645780161615844No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18560.36438168982008656No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17180.3372886546933775No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16500.3239384634715209No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16170.31745969420209047No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15480.30391317663873596No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG13300.26111403419219564No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13080.256794854679242No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11650.22872018784504355No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11080.21752958637966374No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10720.21046183808573962No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10350.20319776345031765No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10270.2016271527183345No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10210.20044919466934716No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9590.1882769614964779No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9580.18808063515498002No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9070.17806799173858753No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8510.16707371661470563No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8280.16255821076025412No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7700.15117128295337642No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6310.1238819214851695No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6220.12211498441168848No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5630.11053173026331288No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5560.10915744587282764No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5500.1079794878238403No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5260.10326765562789089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)