FastQCFastQC Report
Wed 31 May 2023
EGAF00007940851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524600
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43740.8337781166603127No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24190.46111322912695385No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16430.3131910026687No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12660.24132672512390393No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12640.2409454822722074No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10480.19977125428898207No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10270.19576820434616854No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9280.17689668318719023No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9170.17479984750285932No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8330.15878764773160503No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7800.14868471216164697No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7530.14353793366374382No Hit
TTCGCGGGCGGTCTGCTGGATGGCGTTCAGC7050.13438810522302708No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6810.1298131910026687No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6750.1286694624475791No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6500.12390392680137247No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6000.1143728555089592No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5950.11341974837971787No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5360.10217308425467023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)