FastQCFastQC Report
Wed 31 May 2023
EGAF00007940853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582857
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48460.8314217724072972No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31610.5423285642962168No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24940.4278922617382995No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14920.2559804548971703No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC11130.19095592915586498No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6900.11838238195646617No Hit
GCTAACACCCTGAACGGTGAAAACGTACGTA6430.1103186544898663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)