FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490972
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42040.8562606421547461No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23220.47293939369251203No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17540.35725051530433505No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17410.3546027064679859No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17110.34849237838410335No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16190.32975403892686345No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10960.22323065266451042No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10710.21813871259460824No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10440.21263941731911393No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10170.2071401220436196No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9690.19736359710940746No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7590.15459130052222939No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7150.14562948599920159No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6910.14074122353209553No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6620.13483457305100902No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6370.12974263298110686No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6270.12770585695314599No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6050.12322494969163211No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5820.11854036482732214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5760.11731829921054562No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5370.10937487270149826No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5230.10652338626235304No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5190.1057086758511687No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5150.10489396543998436No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4940.10061673578126654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)