FastQCFastQC Report
Wed 31 May 2023
EGAF00007940858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566688
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11960.21105087808458975No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11450.20205121689536393No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8560.1510531368230843No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8510.1501708170986504No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8510.1501708170986504No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7520.13270088655485912No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6380.1125839968377661No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5680.10023152069569147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)