FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566688
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15300.26998983567677454No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11800.20822745496640124No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10490.18511067818623297No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9580.16905245920153594No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9420.16622903608334744No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9210.16252329324072504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8550.15087667287819753No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8270.14593568242136767No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7460.13164210288553843No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7260.1281128239878028No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6340.11187814105821899No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6100.10764300638093625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)