FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585665
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC33110.5653402542409056No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT30840.5265808952216711No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26490.4523063526077194No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC21640.36949450624503766No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT16530.2822432619330163No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG16140.27558416500900684No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14870.2538994134872325No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG14640.24997225376281662No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG14160.24177644216403574No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT13740.23460510701510248No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12610.21531080054297252No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12490.21326184764327732No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG10870.18560098349739185No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10670.18218606199789983No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10460.1786003944234332No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10440.17825890227348398No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9530.16272100945079526No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9530.16272100945079526No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA9330.15930608795130322No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT8100.13830432072942722No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7970.1360846217547574No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7940.1355723835298336No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7610.12993776305567176No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT7590.12959627090572257No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC7520.12840104838090033No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7240.12362015828161149No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA7180.12259568183176389No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7050.12037598285709408No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6770.11559509275780523No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6540.11166793303338939No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6490.11081420265851638No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6210.10603331255922754No Hit
GTACTCCAGTCGGTGTTTCCGCCCTCTACGCGGCGAAGCGACCG6180.10552107433430373No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6180.10552107433430373No Hit
CACCTGTTCCATCTGACCGGTAGTCAGCGCCTGTTTAGAGTTGT6090.10398435965953232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)