FastQCFastQC Report
Wed 31 May 2023
EGAF00007940861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585665
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA69731.1906123807978963No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47490.8108731100543826No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA31890.5445092330940042No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA28170.48099169320345253No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26010.4441105410089386No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25170.429767870711072No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA19100.3261250032014889No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA18190.31058711037880016No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC17000.2902683274568226No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT16330.2788283404335243No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA14370.24536210973850237No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG13800.2356295834649501No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13610.23238540804043267No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12010.20506603604449644No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11720.200114399870233No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11390.19447977939607114No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10880.18577172957236646No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9760.16664816917521108No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9670.16511145450043965No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9270.15828161150145562No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT8930.15247624495231915No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8130.13881655895435105No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7980.13625536782973202No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7810.13335268455516378No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7420.12669358763115435No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7030.12003449070714486No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6690.11422912415800843No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6670.11388763200805921No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6300.10757002723399894No Hit
GTACAGCCAGTTACCCCGAGCAAGCCAGCAC6190.10569182040927835No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6000.10244764498476092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)