FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472118
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38220.8095433768676475No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34350.727572344202085No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19060.40371263116424283No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18550.39291024701451754No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18420.3901566981136072No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG13010.2755667015449527No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11980.253750121791586No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10930.2315099191303869No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10440.22113115788849397No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10420.22070753498066162No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10040.2126586997318467No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9950.21075239664660106No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9610.20355080721345087No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9050.19168936579414467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8800.18639407944624015No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8730.18491139926882688No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7800.16521293405462192No Hit
AACCTGGATGCATTCGGTATTATGGATTACA7560.16012945916063356No Hit
GCGAAACTGCTGTATAACAACCTGGATGCAT7460.15801134462147176No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7230.15313968118139956No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7040.14911526355699212No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7020.14869164064915974No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7010.14847982919524355No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6630.14043099394642863No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6140.13005223270453573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5910.12518056926446353No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5640.11946166000872663No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5640.11946166000872663No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5550.11755535692348099No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5460.11564905383823534No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5300.11226007057557645No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4770.10103406351801879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)