FastQCFastQC Report
Wed 31 May 2023
EGAF00007940864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486327
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20310.41762024316971913No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18320.37670127301178014No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17060.3507927793439394No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15640.32159431822621404No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13120.2697773308905325No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12060.2479812965350474No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11510.2366720334260693No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG11290.23214832818247805No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8120.16696584808164056No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8020.1649096184254627No Hit
ATCGGAACCGATCTGCAGGCCGGATTTGGTAATGGTTTCGCCAG7780.1599746672506359No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7650.1573015686976047No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7270.1494878960041289No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7120.14640355151986215No Hit
ATCGGAGCCGATCTGCAGGCCGCTTTTGGTAATGGTTTCACCGG6730.13838425586076858No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6610.13591678027335516No Hit
ATCGGAACCAATTTGCAGACCGGATTTGGTGATGGTTTCGCCAG6420.13200994392661727No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6360.13077620613291058No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6130.12604687792370153No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5930.12193441861134587No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5920.12172879564572808No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5750.11823320523022575No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5610.11535448371157678No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5530.1137094999866345No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5210.10712956508686543No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5150.1058958272931587No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4940.10157774501518525No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4930.10137212204956747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)