FastQCFastQC Report
Sun 21 May 2023
EGAF00007940865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486327
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41000.8430541590329141No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40670.8362686011675271No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18420.37875750266795793No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15690.322622433054303No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14970.3078175795298225No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13150.2703941997873859No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13010.2675154782687369No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9750.20048239147733932No Hit
TGCGAATGGGAACAAACCGAAGATAGCGGTC9000.18506066905600552No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8990.18485504609038775No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8690.1786863571218542No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8580.1764245045000586No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8120.16696584808164056No Hit
TGCGAGTGGGAACAGACTGAAGACAGCGGCC7970.1638815035973738No Hit
TGCGAATGGGAACAAACCGAAGACTCTGGTC7670.15771281462884026No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7200.1480485352448044No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6850.140851731448182No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6620.13612240323897296No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6210.12769186164864382No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6160.1266637468205549No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6120.12584125495808376No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6100.1254300090268482No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5960.12255128750819921No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5620.11556010667719456No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5000.10281148280889196No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4950.10178336798080305No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4940.10157774501518525No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4910.1009608761183319No Hit
CAGACCGAGGACAGCGGTCGTGCAGTTGCTG4870.10013838425586077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)