FastQCFastQC Report
Wed 31 May 2023
EGAF00007940866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491427
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21410.43566999778196963No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17470.3554953228048113No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17380.3536639215997493No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15220.30971029267826145No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13020.264942707665635No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12450.253343833366909No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11400.2319774859745191No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10460.21284951783276052No Hit
ATCGGAACCGATCTGCAGGCCGGATTTGGTAATGGTTTCGCCAG8120.1652330865011487No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8090.1646226194327947No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7910.1609598170226707No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7360.1497679207695141No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7330.14915745370116007No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7070.14386673910875877No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6700.13633764526572614No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6560.13348879894674082No Hit
ATCGGAGCCGATCTGCAGGCCGCTTTTGGTAATGGTTTCACCGG6440.13104693067332482No Hit
ATCGGAACCAATTTGCAGACCGGATTTGGTGATGGTTTCGCCAG6440.13104693067332482No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6200.12616319412649285No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6130.12473877096700017No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5950.12107596855687619No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5540.1127329186227049No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5490.11171547350878157No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5490.11171547350878157No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5180.10540731380245692No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5040.10255846748347161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)