FastQCFastQC Report
Wed 31 May 2023
EGAF00007940867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491427
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44480.9051191733461939No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39730.8084618875234775No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18070.36770466417189124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15200.3093033146326921No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15130.30787889147319947No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13850.2818322965567623No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13080.266163641802343No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9350.1902622363036626No Hit
TGCGAATGGGAACAAACCGAAGATAGCGGTC9310.18944828021252394No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8910.18130871930113732No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8640.17581451568595133No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8590.17479707057202798No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8310.16909937793405735No Hit
TGCGAGTGGGAACAGACTGAAGACAGCGGCC7930.16136679506824006No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7450.1515993219745761No Hit
TGCGAATGGGAACAAACCGAAGACTCTGGTC7210.1467155854277441No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7140.14529116226825145No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6990.14223882692648146No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6870.13979695865306546No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6400.13023297458218616No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6280.1277911063087702No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6200.12616319412649285No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5480.1115119844859969No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5420.1102910503492889No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5280.10744220403030359No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5010.1019480004151176No Hit
CAGACCGAGGACAGCGGTCGTGCAGTTGCTG4960.10093055530119427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)