FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510786
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43630.8541737635722201No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30430.5957485130759261No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30250.5922245323873403No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG27780.5438676862717459No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT26460.5180251612221165No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC19960.3907703030231839No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18530.3627742342194187No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16140.3159836017431958No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15930.3118722909398457No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14770.28916219316895925No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC12590.24648287149608641No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10540.2063486469871923No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA9860.19303583105253472No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9540.1867709764950488No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9540.1867709764950488No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9220.18050612193756288No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9010.17639481113421276No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC8920.17463282078991985No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8650.16934684975704112No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8180.16014534462573368No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7610.1489860724452119No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7580.14839874233044759No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6750.1321492758219685No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6660.13038728547767559No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6600.12921262524814697No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6380.12490553773987542No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6220.12177311046113246No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6120.11981534341191812No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5710.11178849851013928No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5610.10983073146092492No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5560.10885184793631775No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5540.10846029452647489No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5540.10846029452647489No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5530.10826451782155344No Hit
GCATCTGACCTGTACCCGCTGCCGGCTCCGA5150.10082500303453892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)