FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562472
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT29120.5177146595741654No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC27620.4910466654340127No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT27060.4810906142883557No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC20110.3575289081056479No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17300.3075708657497617No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16330.29032556287246297No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15260.27130239371915404No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13860.24641226585501147No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13360.2375229344749605No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12850.2284558164673086No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12440.22116656473566684No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9430.1676527898277603No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9390.16694164331735625No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8770.1559188724060931No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7080.125872932341521No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6890.12249498641710166No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6590.1171613875890711No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5740.10204952424298455No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5660.1006272312221764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)