FastQCFastQC Report
Sun 21 May 2023
EGAF00007940871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562472
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA61711.0971212789258844No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32110.57087286122687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA29700.5280262839750245No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA27350.48624642648878524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA26440.4700678433770925No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18930.33655008604872777No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17400.30934873202577196No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17090.3038373465701404No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15900.2826807378856192No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10840.19272070431950392No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9530.1694306561037705No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9190.16338591076533587No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9060.16107468460652263No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6620.11769474747187415No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6000.10667197656061102No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5800.10311624400859065No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5720.1016939509877825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)