FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508697
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT49900.9809375718748096No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC47840.9404419526751682No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC39960.7855363802027534No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG26470.5203490486478198No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC24390.4794602680967256No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG22150.4354261967340086No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21650.42559716294768796No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT20800.4088878055109426No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16020.3149222425137164No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT15760.30981114494482964No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13940.2740334619626221No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG12000.23589681087169767No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11970.23530706884451846No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11700.22999939059990523No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT11630.22862332586982034No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT10670.20975158100008454No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG9920.1950080303206034No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9730.19127299748180154No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9590.18852086802163173No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9280.18242686707411288No Hit
TGGACGACGCGGGCGCTGCGGTTTGGTCGGGGTCGGTTTCACAG9220.1812473830197544No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9200.18085422166830156No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8920.17534996274796194No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8700.17102518788198082No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT8520.16748673571890535No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8450.16611067098882046No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7840.15411924976950916No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7790.1531363463908771No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7610.14959789422780162No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7320.14389705463173558No Hit
ACGAATAGTGATGTTGTCATACTTCAGCAGCTCATCCGGGTTGT7190.1413415058472922No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7160.14075176382011295No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6800.13367485949396202No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6690.13151247206097147No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6670.13111931070951863No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6660.1309227300337922No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6520.1281706005736224No Hit
TGGATCGTTCAGGTCACGGATAGTGGCCTTGGACGTAGCCGGAG5890.11578601800285829No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5440.10693988759516962No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5310.10438433881072623No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5170.10163220935055642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)