FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510026
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32880.6446730166697384No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11380.22312587985710533No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10030.19665664103398647No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7480.14665918992365093No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7320.14352209495202206No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7270.14254175277338801No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7090.13901252093030553No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6630.12999337288687243No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6230.1221506354578002No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5820.11411182959300115No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5640.11058259774991863No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5490.10764157121401655No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5400.10587695529247529No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5170.10136738127075876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)