FastQCFastQC Report
Wed 31 May 2023
EGAF00007940878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555671
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17100.30773605244830127No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13930.25068790705291444No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11780.21199594724216309No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6910.12435415920571706No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6900.12417419660194612No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6690.12039498192275644No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5610.10095902071549533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)