FastQCFastQC Report
Wed 31 May 2023
EGAF00007940879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555671
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26970.4853591423702155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17510.3151145192029096No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10010.18014256637470732No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7980.14361015780920725No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7790.14019086833755945No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7480.13461202762066043No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7090.12759348607359391No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6690.12039498192275644No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5950.10707774924370715No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5660.10185883373435001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)