FastQCFastQC Report
Wed 31 May 2023
EGAF00007940881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences599013
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58950.9841188755502802No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC40970.6839584449753178No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25630.42787051366164003No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA25210.42085897968825386No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG23860.39832190620236957No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19120.31919173707415366No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16800.2804613589354488No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC16440.2744514726725463No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15110.2522482817568233No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15070.2515805166165008No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC11260.18797588700078294No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11150.1861395328648961No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11120.1856387090096542No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10070.1681098740761887No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10060.16794293279110803No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9460.1579264556862706No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9010.15041409785764248No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8890.148410802436675No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8890.148410802436675No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7800.13021420236288694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7060.11786054726692075No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6680.11151677843385703No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6360.10617465731127705No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6350.10600771602619642No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.10533995088587392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)