FastQCFastQC Report
Sun 21 May 2023
EGAF00007940882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572894
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24770.4323661968880805No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16990.29656446044119855No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG16060.2803310909173425No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15410.26898518748669037No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA13670.23861307676463708No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13540.23634389607850667No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13380.23355105831096157No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT13210.23058366818294482No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11300.19724416733287484No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10500.18327997849514918No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT10410.18170900725090505No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9800.17106131326213925No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9140.15954085747101557No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9100.1588426480291293No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8990.156922572063942No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8910.15552615318016946No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8760.1529078677730959No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8390.1464494304356478No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC8330.14540211627281835No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8330.14540211627281835No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG8120.14173651670291537No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8050.14051465017961437No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7850.13702360297018296No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7730.1349289746445241No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7650.13353255576075154No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7190.1255031471790593No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6710.1171246338764239No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6530.11398269138793564No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6090.10630238752718654No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6040.10542962572482868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)