FastQCFastQC Report
Wed 31 May 2023
EGAF00007940883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572894
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24990.43620634881845505No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19830.3461373308151246No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17680.3086085733137369No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17350.3028483454181751No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16740.2922006514294093No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG16710.29167699434799454No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16320.2848694522896033No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14350.2504826372767039No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA14340.25030808491623235No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA14200.24786435186963032No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13970.2438496475787842No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12170.21243022269390152No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10850.18938931111165416No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10220.1783925124019452No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10070.17577422699487164No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9780.17071220854119612No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9390.16390466648280483No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8890.1551770484592263No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC8710.15203510597073805No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8400.14662398279611935No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8370.14610032571470466No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA8270.14435480210998894No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7980.1392927836563134No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7950.13876912657489868No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7760.13545263172593883No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7620.13300889867933685No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.12724867078377503No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6300.1099679870970895No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6170.1076988064109591No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5890.10281134031775513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)