FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529736
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG55171.0414621622846096No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG54021.0197532355739463No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA37670.7111089297310359No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA32370.6110590935862392No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25810.48722382469758524No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG25030.472499509189483No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16150.3048688403280124No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16110.3041137472250328No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG15550.2935424437833185No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14600.27560898258755306No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14310.27013455759095095No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG14250.26900191793648154No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13620.2571092015645529No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13590.2565428817373182No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG13350.25201232311944066No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12270.23162480933899152No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT12140.22917075675430781No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11590.21878822658833835No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11300.21331380159173627No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10520.1985894860836341No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA10520.1985894860836341No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9250.1746152800640319No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9090.1715949076521135No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8820.1664980292070012No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8800.1661204826555114No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8780.16574293610402163No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8510.16064605765890935No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8490.16026851110741955No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8420.15894709817720526No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8340.15743691197124607No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8220.15517163266230727No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7980.15064107404442967No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7710.1455441955993174No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7610.1436564628418684No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7390.13950345077548063No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG7330.13837081112101124No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7280.13742694474228673No Hit
TTTGACGATGTACTTACGGTTGTTGTGAATATAGATACCTTTGT6980.13176374646993974No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG6870.12968724043674584No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6730.12704441457631724No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6590.12440158871588868No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6570.12402404216439887No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6550.12364649561290907No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6520.12308017578567439No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6390.12062612320099068No Hit
GCCCAGGGTGATAGACGTCAGACCGGTCAGAGTGTCCTGCAGGC6120.11552924475587839No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5990.11307519217119472No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5940.1121313257924702No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5650.10665690079586813No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5630.10627935424437833No Hit
GTTCAGGTCGTTTGCCAGAGCAAAGGTAATGTTTTTACCGTCAC5400.10193756890224563No Hit
GATAACGGTTTTCGCATCGTTACCACCGTTAGTGGTACCGCCCA5360.10118247579926605No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5350.10099370252352115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)