FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences573345
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA47970.8366690212699159No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA43010.7501591537381507No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT29000.5058036609720151No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC13530.2359835701017712No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12800.223251271049717No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG11550.2014493891112681No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA11470.20005406866720737No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT11240.19604252239053274No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10580.18453112872703173No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10400.1813916577278951No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9310.1623804166775676No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9270.16168275645553726No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8830.15400849401320324No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8550.14912487245899067No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC8210.14319476057173255No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8160.1423226852941946No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7960.13883438418404276No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7790.13586932824041373No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7250.12645091524300378No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7110.1240091044658975No Hit
CAGCACGACTTTAGACGCTTTGTTACCGTATTTAACAACATAGG6510.11354420113544202No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6320.11023031508079777No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6200.10813733441470669No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5810.1013351472499106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)