FastQCFastQC Report
Sun 21 May 2023
EGAF00007940887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences573345
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT97601.7022909417540921No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29670.5174894696910237No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13290.231797608769589No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG11890.2073795009985262No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG11740.2047632751659123No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11390.19865874822314664No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11370.19830991811213144No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10520.18348463839398615No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9830.17144999956396237No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9380.16360132206612074No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG9360.16325249195510558No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9270.16168275645553726No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9210.16063626612249168No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9040.15767121017886265No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9020.15732238006784746No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA8730.1522643434581273No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7900.1377878938509972No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG7860.13709023362896686No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC7230.1261020851319886No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA7180.12523000985445062No Hit
AACGGTTTTGTAGCTTGGGATTCCCAGTACA6460.11267212585790405No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6190.10796291935919909No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG6010.10482344836006245No Hit

[OK]Adapter Content

Adapter graph