FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566315
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG28960.5113761775690208No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21580.3810600107713905No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG20060.35421982465588936No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19140.33797444884913874No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17720.3129000644517627No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15220.26875502149863595No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12630.22302075699919657No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10950.19335528813469535No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10300.1818775769668824No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8460.14938682535338108No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8330.14709128311981848No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC7790.1375559538419431No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7790.1375559538419431No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7760.13702621332650555No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7680.13561357195200552No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7380.13031616679763028No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7130.12590166250231763No Hit
CGGTTTGTCAACCGCGGTGGCGTCATCGTCGCTGCAATAGCTTG6430.1135410504754421No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6390.11283472978819208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)