FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566315
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30030.5302702559529591No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG28760.5078445741327706No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20580.36340199359013975No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG19520.344684495378014No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19240.3397402505672638No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18480.32632015750951326No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16910.29859707053494966No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14250.2516267448328227No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11610.20500957947432083No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11110.1961805708836955No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9970.17605043129706965No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9620.1698701252836319No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8670.15309500896144373No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8590.15168236758694367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7840.13843885470100561No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7730.13649647281106805No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7710.13614331246744302No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7650.135083831436568No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7550.13331802971844292No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7410.13084590731306783No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6730.11883845562981733No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6710.11848529528619231No Hit
AAATCCCCGTCTGCAGAAGCGTGCGGCTACT6280.1108923478982545No Hit

[OK]Adapter Content

Adapter graph