FastQCFastQC Report
Wed 31 May 2023
EGAF00007940890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535827
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19860.3706420169196401No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19040.3553385700981847No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18310.3417147698790841No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16330.3047625446272771No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA13320.24858769714851997No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12080.22544589951607516No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11830.22078021450953386No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11440.21350174589932946No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11330.21144884449645127No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11300.21088896229566634No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10570.19726516207656575No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10550.19689190727604244No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT8890.16591175883260828No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8520.15900654502292716No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8140.15191470381298441No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC7080.13213219938524934No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6110.11402934155986914No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5770.10768400995097298No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5710.10656424554940307No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5520.10301832494443168No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5460.10189856054286178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)