FastQCFastQC Report
Wed 31 May 2023
EGAF00007940893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences583545
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA40480.6936911463554652No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36950.633198810717254No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20120.3447891764988133No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17890.3065744715488951No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10350.1773642135567951No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8870.15200198785012295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7900.1353794480288581No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7650.13109528828110942No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6240.10693262730380691No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6210.10641852813407707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)