FastQCFastQC Report
Wed 31 May 2023
EGAF00007940895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542814
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12820.23617666456649974No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11170.2057795119506866No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11000.202647684105421No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10350.1906730482264643No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8840.16285504795381106No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8780.16174969694959968No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7520.13853732586116055No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6910.1272995906516781No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6760.12453621314114964No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6750.12435198797378108No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6140.11311425276429862No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6080.11200890176008725No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5980.11016665008640161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)