FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547985
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24610.4490998841209157No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22750.4151573491975145No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14240.2598611275856091No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12330.22500615892770787No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10590.19325346496710677No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9570.17463981678330612No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9290.16953018787010593No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8500.15511373486500543No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8470.15456627462430542No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8210.14982161920490525No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8180.14927415896420523No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7940.14489447703860509No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7850.143252096316505No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7680.1401498216192049No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7600.13868992764400487No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6830.12463844813270436No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6280.11460167705320402No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5800.1058423132020037No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5610.10237506501090357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)