FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555559
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA42920.772555210157697No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA37060.6670758641296424No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25480.45863715644963No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG22250.40049751691539515No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT21610.3889775883389523No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19110.3439778673372225No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT17620.31715803362019157No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG17170.3090580838398802No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14890.2680183382863026No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG13980.25163843984167295No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA12910.23237855925293266No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT12580.22643859608070432No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC12170.21905864183642063No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT12060.2170786541123445No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11810.2125786820121715No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11680.2102386965200816No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT11100.19979876124768026No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11040.19871876794363874No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10790.19421879584346577No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10610.19097881593134122No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10430.1877388360192167No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG10280.1850388527591129No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10000.17999888400691916No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT9810.17657890521078767No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT9740.17531891302273925No Hit
AGACGCCGGACCGATACGGCTGGCCCACGGACGGCTAGTGCCCG9500.17099893980657319No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC9430.16973894761852476No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9060.16307898891026876No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8240.1483190804217014No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8210.14777908376968063No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8110.14597909492961145No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG8070.14525909939358375No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7980.14363910943752148No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG7510.1351791618891963No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7430.13373917081714093No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7320.1317591830930648No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA6640.11951925898059432No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6620.1191592612125805No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6610.11897926232857356No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6600.11879926344456665No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT6460.11627927906846978No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6170.11105931143226913No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6160.1108793125482622No Hit
GGAGACAACCAGCTCGTCTTCACCGTTCGGCGGAGGCGGCGGGA6110.1099793181282276No Hit
GCTCACAACCAGTTCGTCTTCGCCGTTAGGCGGCGGCGGCGGAA6060.10907932370819301No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6040.10871932594017916No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5810.10457935160802002No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5780.10403935495599927No Hit
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA5620.10115937281188855No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5620.10115937281188855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)