FastQCFastQC Report
Sun 21 May 2023
EGAF00007940900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519686
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC42690.8214575724572145No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC42090.8099121392533184No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT41920.8066409331788812No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG30970.5959367772077754No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC21230.4085159115311938No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20160.3879265556509123No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC18900.36368114592273026No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18250.35117359328517606No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17610.3388584645343534No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16240.3124963920521238No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA13490.25957982320093287No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG12610.24264652116855176No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG11850.22802230577694993No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11270.21686172034651696No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG11000.21166627540476365No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10890.20954961265071603No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10880.20935718876398443No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10600.20396931993549952No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9770.18799813733677645No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT9740.18742086567658162No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8640.16625423813610526No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8590.16529211870244725No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8200.15778758711991472No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8070.15528607659240387No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7580.14585730614255532No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7490.14412549116197088No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7320.14085428508753361No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7320.14085428508753361No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7170.13796792678655959No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7120.13700580735290155No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7090.13642853569270674No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7050.13565884014578034No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6880.13238763407134307No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6830.13142551463768506No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6800.13084824297749023No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6680.12853915633671104No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6430.12372855916842093No Hit
TGGGGTACCGGATACCTGTTTTTCCAGGCGACCCTGAACCGGAG6370.12257401584803132No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6270.12064977698071529No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC6230.11988008143378887No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6220.11968765754705726No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6210.11949523366032566No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6160.11853311422666765No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6130.11795584256647283No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5980.11506948426549878No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5860.11276039762471955No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5730.1102588870972087No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT5640.10852707211662428No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5330.10256193162794458No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5330.10256193162794458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)