FastQCFastQC Report
Wed 31 May 2023
EGAF00007940902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544961
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18060.3313998616414752No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16340.29983797005657287No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15490.2842405236338013No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10250.18808685392165678No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10210.18735285644293811No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10190.18698585770357878No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9960.1827653722009465No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9770.17927888417703286No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA8780.16111244657874602No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8240.15120348061604408No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7770.1425790102410998No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7690.1411110152836625No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT7450.13670703041135054No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7390.13560603419327255No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6660.12221058020665698No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6440.11817359407370435No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6260.11487060541947039No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG5990.10991612243811942No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5860.10753063063228378No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5630.10331014512965148No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5470.10037415521477683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)