FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544961
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20780.3813116901943442No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20410.3745222135161966No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20070.3682832349470879No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16570.30405845555920513No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12010.22038274298527785No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11330.20790478584706062No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10620.1948763305998044No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9750.17891188543767353No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9520.1746913999350412No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA9340.17138841128080726No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8680.15927745288194936No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8670.15909395351226968No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8490.1557909648580357No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7880.14459750330757615No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG7620.13982651969590484No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7420.13615653230231153No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6960.12771556129704695No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6680.12257757894601631No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6680.12257757894601631No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6490.1190910909221027No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC6400.11743959659498569No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5820.10679663315356512No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5800.10642963441420579No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5710.1047781400870888No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5640.10349364449933116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)