FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564628
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10400.1841920698229631No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8070.14292596187224155No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7450.13194528078664183No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6790.12025616866326147No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6210.10998391861544238No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5700.10095142288373939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)