FastQCFastQC Report
Wed 31 May 2023
EGAF00007940909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences639014
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT116871.8289114166512785No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31610.4946683484242912No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27230.42612524921206735No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23820.37276178612675154No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG23640.3699449464330985No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19270.3015583383149665No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC19260.30140184722087465No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18170.28434431796486465No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15480.24224821365416094No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15270.23896190067823242No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15260.23880540958414057No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC14470.2264426131508856No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14270.22331279126904888No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13770.21548823656445715No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13160.2059422798248552No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11670.18262510680517172No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11220.17558300757103915No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG10670.1669759973959882No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10460.16368968442005966No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9780.15304829002181486No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9700.15179636126908017No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9310.1456932085994986No Hit
CAGCAGGACGTCAAAAACCGCCGCAACCCGC8570.1341128676367028No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8550.13379988544851915No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8210.12847918824939672No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8110.12691427730847837No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG8050.12597533074392736No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA7910.12378445542664167No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7470.11689884728660092No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7280.11392551649885604No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7130.11157815008747851No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT7040.11016973024065199No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6950.10876131039382547No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6770.10594447070017246No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6700.10484903304152961No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6590.10312763100651942No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6410.10031079131286638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)