FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences581357
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51620.8879225673725439No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49430.8502520826273702No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47270.8130976319198016No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25860.4448213404156138No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22850.39304592530923343No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19870.34178654424045807No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18980.32647753445817285No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18360.31581283101433366No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17880.30755628641265176No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12800.22017452271151805No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10810.18594426488371174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9030.15532624531914124No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8760.15068193898069515No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8730.15016590494309004No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8170.14053326957446113No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7540.1296965547847536No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6550.11266743154378463No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6360.10939921597228554No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6240.10733507982186505No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6220.10699105713012831No Hit

[OK]Adapter Content

Adapter graph