FastQCFastQC Report
Sun 21 May 2023
EGAF00007940914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571349
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC17980.3146938211145902No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17230.30156699320380365No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15730.27531333738223046No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT13560.23733304862702131No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG13500.2362829023941584No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12760.2233310988555156No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11170.19550222368464812No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10200.17852485958669745No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8460.1480706188336726No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8100.141769741436495No Hit
ACCGATACGTTTGCCAGAATCACGGATGAATTTGCGGGTCACTG8100.141769741436495No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7760.1358189127836051No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7400.12951803538642756No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7220.12636759668783878No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7050.12339218236139382No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6420.1123656469163331No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6410.11219062254418928No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6170.10799003761273757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)