FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571349
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19440.3402473794475881No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG18450.3229199666053498No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16510.28896523840944854No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15950.27916387356939454No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15260.26708719189147084No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA14580.25518553458569104No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13100.22928192750840556No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12050.21090436843330435No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11710.20495353978041442No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10450.18290046889029296No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9860.17257403093380752No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9790.17134886032880078No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9560.1673232997694929No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8750.1531463256258434No Hit
GTTGCTAAAGTTCAGGCAGAACGTTCCCAGG8400.14702047260080967No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7640.13371862031787926No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7430.13004310850285902No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7370.1289929622699961No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7090.12409227984996911No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7020.12286710924496237No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6540.11446593938205896No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6360.11131550068347017No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6280.1099153057063196No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6130.10728994012416228No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6060.10606476951915554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)