FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527936
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18130.34341283791974786No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16200.30685537640926175No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15680.2970056976603225No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13690.25931173475572794No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13680.2591223178567099No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13510.25590223057340283No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12120.2295732816098921No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10910.2066538368287065No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10340.1958570735846769No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10090.19112165110922535No Hit
GACAGACGGTGGACGCGGGATGAAACGGCGGGATTTACGACGGT9760.1848708934416293No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA9660.18297672445144866No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9090.17217996120741907No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8510.16119378106437143No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8330.1577842768820463No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7830.14831343193114319No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6690.126719905443084No Hit
CTGACGGCCAACACGGCCACGGCGCTGTGCGGCAGACGCGGTAG6480.1227421505637047No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6350.12027973087646987No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6130.11611255909807248No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5900.11175597042065705No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5780.10948296763244031No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5760.10910413383440416No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5440.10304279306582616No Hit
AATGTTGGTGCGGCCATCGATAACACGGGACACGTCCAGGTTTG5340.10114862407564554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)