FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527936
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42640.8076736574130198No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32670.6188250090920112No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24900.47164807855497637No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16520.31291671717783975No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16030.30363528912595467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15760.29852103285246695No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14760.27957934295066067No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14140.26783549521154076No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12020.22767911261971147No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10740.20343374954539944No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10240.1939629045944963No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT10100.1913110680082434No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG9400.17805188507697903No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9270.1755894653897442No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9030.1710434598133107No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8940.16933870772214812No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8770.16611862043884107No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7460.14130500666747486No Hit
CGTGACGAGAAACCGGACTTCGTTGTAACCA6690.126719905443084No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6570.12444690265486726No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6560.12425748575584919No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6390.12103739847254212No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6260.11857497878530732No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6250.11838556188628925No Hit
CGCCAGAAGGGTAAAAGCGTAATCTGCCTGA5370.10171687477269972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)