FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007940919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433093
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23970.5534608040305431No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22040.508897627068551No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16250.3752080961825751No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14620.33757183791933837No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14240.32879774090091507No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14180.32741235716116396No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13420.3098641631243174No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13350.30824788209460785No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12890.2976266067565165No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12590.29069968805776125No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC11990.2768458506602508No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11050.2551415054041511No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9540.2202760146204164No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8760.2022660260036528No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8650.1997261558141092No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8420.19441551814506353No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8200.18933577776597638No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8150.18818129131618383No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7770.17940719429776053No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7610.1757128376584244No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7310.16878591895966918No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7050.16278258942074797No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG6680.15423938969228318No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6520.15054503305294706No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6350.14661977912365243No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6190.1429254224843163No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6050.1396928604248972No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5720.13207324985626642No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5510.12722440676713775No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5500.12699350947717927No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5490.12676261218722076No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5450.12583902302738673No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5440.12560812573742822No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5310.12260646096796761No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5300.12237556367800911No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5170.11937389890854852No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5130.11845030974871448No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5050.11660313142904642No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5050.11660313142904642No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4940.11406326123950283No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4940.11406326123950283No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4910.1133705693696273No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4820.11129249376000074No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT4620.10667454796083058No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG4540.10482736964116252No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4350.10044032113195088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)