FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402293
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64701.6082805318511633No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21220.5274762424402115No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG13450.33433343359193424No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10000.2485750435627764No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9780.24310639260439532No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8710.21650886294317823No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7740.19239708371758893No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7410.18419410728001728No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6920.17201393014544125No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5550.1379591491773409No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5140.12776757239126704No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4780.11881887082300711No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4660.1158359703002538No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4590.11409594499531435No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG4570.11359879490818882No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4460.11086446942899827No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4250.10564439351417998No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4060.10092146768648722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)