FastQCFastQC Report
Wed 31 May 2023
EGAF00007940922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403860
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT35040.8676273956321497No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT23690.586589412172535No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT13180.32635071559451295No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC11030.2731144455999604No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG10560.26147674936859305No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9090.22507799732580597No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7780.19264101421284605No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7660.18966968751547567No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7640.18917446639924726No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7620.18867924528301888No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7360.18224137077204972No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7070.17506066458673797No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6450.15970880998365772No Hit
GGACGCGGTGCTAGAGGCACGGGATTTGGAAGTGGTAGTCTTGC6130.15178527212400336No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6110.15129005100777498No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6000.14856633486851878No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5920.1465854504036052No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5900.14609022928737683No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5700.14113801812509286No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5600.13866191254395088No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5280.13073837468429653No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5220.12925271133561134No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5170.12801465854504038No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5120.12677660575446936No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5100.12628138463824096No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4870.12058634180161443No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA4750.11761501510424405No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4600.11390085673253109No Hit
TTTTGCTTTGTCACGTGGGTCATACAGATCACGGAAGTCCAGGT4580.11340563561630268No Hit
ATCATACAGGTCGCGGAAGTCCAGGTTGTGTTCAGATGCAGTCA4540.1124151933838459No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4520.11191997226761749No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4430.1096914772445897No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4380.10845342445401872No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4250.10523448719853415No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4130.10226316050116378No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4110.10176793938493538No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4070.10077749715247859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)