FastQCFastQC Report
Sun 21 May 2023
EGAF00007940926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410310
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17550.4277253783724501No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG17350.4228510150861543No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13300.32414515853866593No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13180.3212205405668884No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12060.29392410616363235No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC11560.28173819794789307No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11220.27345178036119033No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11040.26906485340352415No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9340.2276327654700105No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9240.22519558382686264No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8700.21203480295386418No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8370.2039921035314762No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6920.16865296970583218No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6480.15792937047598157No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6380.1554921888328337No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6250.15232385269674148No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6180.150617825546538No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5590.1362384538519656No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5460.13307011771587335No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5380.13112037240135507No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4990.12161536399307842No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4900.11942190051424534No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4850.1182033096926714No Hit
CAGGTTGTGAGATGCACGGGTACGACGGTCTTCCGGGGTATCGT4580.11162291925617215No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4480.10918573761302429No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC4300.10479881065535814No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4290.10455509249104335No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4240.10333650166946944No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4190.10211791084789548No Hit
ACCCGGGCGCTGGCCTTCTGCACCCCAGCTGAAACGGGACAGGG4140.10089932002632157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)